To train the models, we use the run_train.py CLI script. The script supports various arguments. See the training/README.md file for more information, along with the hyperparameters used in the paper.

KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: kmer: Produces a k-mer hash containing ...

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